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Issues

Dark theme buttons render incorrectly in installed (install4j) builds
Bug
virtualcell/vcell#2204 · opened on Nov 5, 2026
1
Users can't delete their account
Feature
virtualcell/vcell#2203 · opened on Nov 4, 2026
Spatial CLI reports.h5 sized by all saved times, not the SED-ML output points
Bug
virtualcell/vcell#2202 · opened on Nov 4, 2026
1
Spatial CLI reports shape membrane and region variables as full-grid volume data, zero-padded
Bug
virtualcell/vcell#2201 · opened on Nov 4, 2026
1
Spatial CLI reads simulation blocks at the wrong times when initialTime is not 0
Bug
virtualcell/vcell#2200 · opened on Nov 4, 2026
1
SED-ML import/export: map data generators to VCell output functions
Feature
virtualcell/vcell#2199 · opened on Nov 4, 2026
1
CLI report CSVs: named 'SId [id].csv', and one empty report stops the rest
Bug
virtualcell/vcell#2195 · opened on Nov 3, 2026
1
QuantOmexExecTest never compares HDF5 results
Bug
virtualcell/vcell#2193 · opened on Nov 3, 2026
1
CLI reports.h5: sedmlDataSetShapes per job, and Y curves labelled ::X
Bug
virtualcell/vcell#2192 · opened on Nov 3, 2026
3
CLI reports.h5: repeated task without changes loses its iteration dimension
Bug
virtualcell/vcell#2191 · opened on Nov 3, 2026
1
CLI reports.h5: wrong repeated-task values and parameter names for multi-parameter scans
Bug
virtualcell/vcell#2190 · opened on Nov 3, 2026
1
Move desktop client simulation start/stop to /api/v1 and retire the /api/v0 RPC start/stop
virtualcell/vcell#2184 · opened on Oct 28, 2026
Find ways to optimize update process
virtualcell/vcell#2181 · opened on Oct 15, 2026
VCell needs to release latest version of biosimulators cli to biosimulators
Task
virtualcell/vcell#2179 · opened on Oct 14, 2026
Spring SaLaD fast off-rate generates error (in the tutorial)
Bug
virtualcell/vcell#2178 · opened on Oct 14, 2026
MathDescription Editor / Viewer could use modernization / additional features
Feature
virtualcell/vcell#2177 · opened on Oct 14, 2026
SmoldynFileWriter sets no boxsize: models starting with few or no particles get one virtual box (N×M surface checks)
virtualcell/vcell#2159 · opened on Oct 4, 2026
Spatial hybrid: combineHybrid keeps no-op particle jump processes that suppress competing Smoldyn reactions
virtualcell/vcell#2158 · opened on Oct 3, 2026
Rule-based glyph error outline is hue-only; red status text below 4.5:1 (#1605 audit D4, S8)
virtualcell/vcell#2140 · opened on Sep 30, 2026
Geometry subvolume/CSG palette is confusable under deuteranopia (#1605 audit G2)
virtualcell/vcell#2139 · opened on Sep 30, 2026
Table renderer: yellow match-row highlight is hue-only (#1605 audit S7)
virtualcell/vcell#2138 · opened on Sep 30, 2026
Remove unreachable general-constraints UI (cbit.vcell.constraints.gui) (#1605 audit S6)
virtualcell/vcell#2137 · opened on Sep 30, 2026
Input validation: keep the error reason visible after the dialog closes (#1605 audit S5)
virtualcell/vcell#2136 · opened on Sep 30, 2026
webapp-ng: publication badge contrast below 4.5:1 and missing UConn accessibility footer link (#1605 audit X4)
virtualcell/vcell#2135 · opened on Sep 30, 2026
FRAP analysis table: red-on-pink text is 2.21:1 (#1605 audit X3)
virtualcell/vcell#2134 · opened on Sep 30, 2026