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chore: bump vcell_submodule to include fixLegacyFluxStoichiometry - #34

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chore/bump-vcell-flux-stoichiometry
Nov 7, 2026
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jcschaff merged 1 commit into
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chore/bump-vcell-flux-stoichiometry

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@jcschaff jcschaff commented Nov 6, 2026

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Bumps vcell_submodule to the merge commit of virtualcell/vcell#2209.

With it, VCell's load-time repair restores a flux step's zero reactant and product stoichiometries when the document's stored math transported the species. vcml_regenerate_math then reproduces those older documents' original dynamics. This covers 15 flux steps in the public corpus.

I verified the change locally: with the fix cherry-picked onto the previous pin, a native build regenerated all 6 affected corpus documents. vcell-core's math oracle then matched them, as recorded in vcell-core #109 (D78).

🤖 Generated with Claude Code

virtualcell/vcell#2209 restores a flux step's zero reactant/product
stoichiometries when the document's stored math transported the species,
so vcml_regenerate_math reproduces the original dynamics of those older
documents.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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jcschaff merged commit 3e13a6e into main Nov 7, 2026
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jcschaff deleted the chore/bump-vcell-flux-stoichiometry branch November 7, 2026 02:52
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