2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
Infectious Disease Sequencing Platform
Unpivoted and cleaned data sets on the COVID-19 pandemic
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
VAPiD: Viral Annotation and Identification Pipeline
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
forester is a collection of open-source libraries and tools for genomics and evolutionary biology research. It includes the tree viewer Archaeopteryx.
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Reconstruction and analysis of viral and host genomes at multi-organ level
Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.
A software to detect virome-wide integrations
genetic distance plotting for recombination events analysis
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
The art of decorating a phage genome by gluing feature cutouts into it.
Large-Scale Computational Modeling of H5 Influenza Variants Against HA1-Neutralizing Antibodies
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