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microbiomes

Here are 6 public repositories matching this topic...

raw-lab / NFixDB

Comprehensive database for diazotroph nitrogenases, alternative nitrogenases, and nitrogenase-like enzymes at the University of North Carolina at Charlotte (UNCC)

database agriculture evolution phylogenetic-trees phylogenetics wheat agriculture-research agricultural-modelling sorghum diazotrophs soils switchgrass microbiomes nitrogenase alternate-nitrogenases nifdhk vnfdhk anfdhk rhizospheres

Updated Oct 18, 2026
Python

beantkapoor786 / RAPID

RAPID - R based Amplicon Pipeline for Interactive DADA2 - A unified Shiny application that takes you from raw amplicon data to ASV and taxonomy tables with DADA2, and onward to ecology visualizations, PERMANOVA, and ANCOM-BC2 analyses.

beta-diversity permanova alpha-diversity ampliconseq microbiomes 16s-seq ancombc2

Updated Oct 12, 2026
R

ISCB-Academy / ISCB-Academy-Tutorial-Community-Modelling

It provides a brief overview of the key modelling paradigms that have been used to study microbiomes

python modelling microbiomes

Updated Dec 2, 2021
Jupyter Notebook

bioatmosphere / microbiome-climate-gradient

Application of DEMENTpy to a climate gradient in Southern California

decomposition microbial-ecology tradeoff dement dementpy southern-california climate-gradient microbiomes microbial-strategy

Updated Jan 6, 2023
Jupyter Notebook

yersim / Pastobiome

Pastobiome project: the gut microbiota of agro-pastoralist and pastoralist children from the Somali Regional State of Ethiopia.

metagenomics microbiome metagenomic-analysis microbiome-analysis microbiome-data 16s-rrna metagenome-assembled-genomes microbiomes 16s-rrna-analysis

Updated Nov 10, 2026
Shell

SprockettLab / MAGmaker

The point of MAGmaker is to...uh, make MAGs.

metagenomics microbiome metagenomes metagenomic-analysis metagenomic-classification microbiome-data metagenome metagenome-assembly microbiome-workflow metagenomic-pipeline metagenome-assembled-genomes microbiome-analysis-pipelines microbiomes

Updated Nov 12, 2026
Python

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