Repository of tutorials on Coarse-Grained Molecular Dynamics (CG-MD) using the Martini 3 force field, designed for running on Google Colab
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Oct 22, 2024 - Jupyter Notebook
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martini-cg
Here are 8 public repositories matching this topic...
This repository contains the tools to build the Martini 3 version of graphene (structure and ITP files)
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Feb 16, 2026 - Python
A library for the Analysis of Molecular Dynamics Simulations of Self Assembling Peptides. Started during an internship at CNTE, Niguarda Hospital, Milan
graphs matrix molecular-dynamics pytorch networkx coarse-grained-molecular-dynamics gromacs trajectory-analysis md martini graph-traversal distance-matrix-computation multidimensional-scaling distance-map molecular-dynamics-analysis self-assembling-peptide martini-cg
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Jul 30, 2023 - Jupyter Notebook
Analyze membrane thickness and curvature profiles for the Martini model
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Jun 8, 2021
Analyzing how lipids sort in tubules according to their intrinsic curvature
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Jul 23, 2024 - Python
Martini 3 coarse-grained models and GROMACS simulation files for linear PFAS
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Oct 24, 2026
Snakefiles for dsDNA based on MARTINI website tutorial and a new example for a ssDNA.
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Jan 30, 2019
A coarse-grained analysis of the Recoverin protein for the exam of Multiscale Methods @ Unitn
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Mar 5, 2024 - Jupyter Notebook
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