interactomics

Protein Graph Library

A python package to process protein cross-linking data.

Local platform (browser + Docker) for CoIP-MS / AP-MS analysis and identification of protein-protein interaction partners in the mouse proteome (Mus musculus, taxid 10090). Orchestrates published proteomics tools in reproducible containers. Contains no experimental data.

msVolcano: client-side volcano plots for MaxQuant interactomics data (Proteomics 2016)

Python program which is able to analyse dssp files in order to estimate the interacting area and interacting residues between monomers of a complex protein

Python program that can identify the residues interacting between chains of a complex protein.

A comprehensive user guide for pyXLMS built with Nextra.

Pydantic version of pyXLMS [merged into main pyXLMS in v2.0.0]

Results, figures, and code for the manuscript of pyXLMS.

A comprehensive user guide for pyXLMS built with Nextra.

Reproducible R/Quarto workflow for the analysis of the JAG1-ICD RIME-DIA proteomics dataset.

Link to the web application for pyXLMS.

A template repository for python scripts and projects using pyXLMS.

First-trimester single-cell RNA-seq analysis, followed by the hypergraph analysis to assess network topology as a marker of function.