#

hap-py

Here are 2 public repositories matching this topic...

Esraa15 / Benchmarking_project

Variant calling benchmarking on GIAB HG002 (WES chr22) using hap.py; SNP/INDEL Precision/Recall/F1.

bioinformatics ngs gatk variant-calling bwa giab hg002 hap-py

Updated Jan 15, 2026
R

Hakan-Cam / wes-germline-variant-analysis-na12878

Whole exome sequencing (WES) germline variant analysis of NA12878: bwa, bcftools and VEP pipeline benchmarked against GIAB v4.2.1 with hap.py

bash benchmarking bioinformatics genomics reproducible-research ngs variant-calling vep samtools bwa bcftools whole-exome-sequencing variant-annotation grch38 germline-variants giab hap-py na12878

Updated Oct 21, 2026
HTML

Add this topic to your repo

To associate your repository with the hap-py topic, visit your repo's landing page and select "manage topics."