epitopes

Code for the DiscoTope-3.0 paper and model

Sequence-based prediction of peptide-TCR interactions using paired chain data

Epitopedia: identifying molecular mimicry of known immune epitopes

Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022

Python Eplet Load Calculator

This is APRANK, an Antigenic Protein and Peptide Ranker.

A tool for assembling, searching and classifying linear B-cell epitopes

A tool for downloading HLA alleles, epitopes and frequencies

Prediction of Conformational B-cell epitopes in an antigen for human host

Implementation of the Analytic Hierarchy Process (AHP) to obtain the immunogenicity score of wheat lines based on their celiac disease (CD) epitopes matches on alpha- and gamma-gliadins amplicons by NGS and the score for oligopeptides based on an IFN-g ELISpot assays with fresh peripherical blood mononuclear cells (PBMCs).

IFNepitope: Designing of Interferon-Gamma Inducing MHC Class-II Binders

Processing of proteomic files for prolamin peptides analysis and CD epitopes search for each protein fraction.

BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

The Trypanosoma cruzi Antigen and Epitope Atlas: deep characterization of individual antibody specificities in human Chagas Disease patients across the Americas

Genomic sequence analysis and visualizations to monitor emerging SARS-CoV-2 variants and their potential impact to vaccine efficacy

This is a project to contribute utilities for ViruSurf, a viral db centered in viral sequences.

SRTI - Results in HTML from an immuno-oncology project developed in collaboration with Scripps scientists

A machine-learning workflow for B-cell epitope classification using sequence-derived physicochemical features and five ML classifiers. It integrates protein-grouped evaluation, statistical testing, external SARS validation, and ensemble-based prioritization of potential COVID-19 peptide candidates.