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7 changes: 7 additions & 0 deletions CHANGELOG.rst
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,13 @@ Changelog

version 1.10.0-dev
------------------
+ Speed up opening ``IGzipFile`` and ``igzip.open`` for writing. They no
longer create a 256 KiB zlib compressor only to replace it with an ISA-L
one. On Linux, glibc could return the compressor's memory to the system after
each file and page-fault it in again for the next one, so writing many small
gzip streams to ``io.BytesIO`` can be up to 5 times faster. On Python 3.11,
``IGzipFile`` now closes a file that it opened when writing the gzip header
fails, as ``gzip.GzipFile`` does on newer Python versions.
+ Fix ``python -m isal.igzip`` replacing the input file with empty output and
exiting with status 0 when the output file is the input file, as in
``-f -o data data``. It exits with an error now.
Expand Down
46 changes: 46 additions & 0 deletions src/isal/igzip.py
Original file line number Diff line number Diff line change
Expand Up @@ -156,7 +156,13 @@ def __init__(self, filename=None, mode=None,
f"{isal_zlib.ISAL_BEST_SPEED} and "
f"{isal_zlib.ISAL_BEST_COMPRESSION}, got {compresslevel}."
)
# GzipFile.__init__ would create a zlib compressor only to discard it.
if (isinstance(mode, str) and mode.startswith(("w", "a", "x"))
and "t" not in mode and "U" not in mode):
self._init_writer(filename, mode, compresslevel, fileobj, mtime)
return
super().__init__(filename, mode, compresslevel, fileobj, mtime)
# A write mode can also come from fileobj.
if self.mode == WRITE:
self.compress = isal_zlib.compressobj(compresslevel,
isal_zlib.DEFLATED,
Expand All @@ -167,6 +173,46 @@ def __init__(self, filename=None, mode=None,
raw = _GzipReader(self.fileobj, READ_BUFFER_SIZE)
self._buffer = io.BufferedReader(raw)

def _init_writer(self, filename, mode, compresslevel, fileobj, mtime):
# GzipFile.__init__'s write branch from Python 3.14, with isal_zlib.
# __del__ and close() need these even if opening fails.
self.mode = None
self.fileobj = None
self._buffer = None
if "b" not in mode:
mode += "b"
try:
if fileobj is None:
fileobj = self.myfileobj = builtins.open(filename, mode)
if filename is None:
filename = getattr(fileobj, "name", "")
if not isinstance(filename, (str, bytes)):
filename = ""
else:
filename = os.fspath(filename)
self.mode = WRITE
self._init_write(filename)
self.compress = isal_zlib.compressobj(compresslevel,
isal_zlib.DEFLATED,
-isal_zlib.MAX_WBITS,
isal_zlib.DEF_MEM_LEVEL,
0)
self._write_mtime = mtime
if _GZIP_BUFFERS_WRITES:
self._buffer_size = gzip._WRITE_BUFFER_SIZE
self._buffer = io.BufferedWriter(
gzip._WriteBufferStream(self),
buffer_size=self._buffer_size)
self.fileobj = fileobj
self._write_gzip_header(compresslevel)
except BaseException:
self.fileobj = None
myfileobj = self.myfileobj
if myfileobj is not None:
self.myfileobj = None
myfileobj.close()
raise

def readline(self, size=-1):
"""Read a line of decompressed data, or at most size bytes of it."""
# GzipFile.closed tests whether fileobj is None, so testing fileobj
Expand Down
135 changes: 135 additions & 0 deletions tests/test_igzip.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@
from CPython. Uses pytest which is easier to work with. Meant to complement
the gzip module compliance tests. It should improve coverage as well."""

import gc
import gzip
import io
import itertools
Expand Down Expand Up @@ -60,6 +61,140 @@ def recording_compressobj(*args, **kwargs):
isal_zlib.DEF_MEM_LEVEL, 0), {})]


@pytest.mark.parametrize("mode", ["w", "a", "x"])
def test_igzipfile_writer_skips_zlib_compressor(monkeypatch, tmp_path, mode):
calls = []
monkeypatch.setattr(zlib, "compressobj",
lambda *args, **kwargs: calls.append(args))
with igzip.IGzipFile(tmp_path / "test.gz", mode) as gzip_file:
gzip_file.write(DATA)
assert calls == []
assert gzip.decompress((tmp_path / "test.gz").read_bytes()) == DATA


def test_igzipfile_writer_has_the_attributes_of_gzipfile():
# Catches attributes that new Python versions add to GzipFile.__init__.
with gzip.GzipFile(fileobj=io.BytesIO(), mode="wb") as gzip_file:
expected = {name: type(value)
for name, value in vars(gzip_file).items()}
with igzip.IGzipFile(fileobj=io.BytesIO(), mode="wb") as igzip_file:
found = {name: type(value)
for name, value in vars(igzip_file).items()}
assert found["compress"] is isal_zlib.Compress
del expected["compress"]
assert {name: found.get(name) for name in expected} == expected


@pytest.mark.parametrize("mode", ["w", "wb", "a", "ab", "x", "xb"])
@pytest.mark.parametrize("to_filename", [str, os.fsencode, Path])
def test_igzipfile_write_to_filename(tmp_path, mode, to_filename):
filename = to_filename(tmp_path / "test.gz")
with igzip.IGzipFile(filename, mode, mtime=0) as gzip_file:
assert gzip_file.mode == igzip.WRITE
assert gzip_file.name == os.fspath(filename)
gzip_file.write(DATA)
compressed = (tmp_path / "test.gz").read_bytes()
assert compressed[3] == FNAME
assert compressed[10:15] == b"test\x00"
assert gzip.decompress(compressed) == DATA


@pytest.mark.parametrize(["filename", "fileobj_name", "name", "header_name"], [
(None, "test.gz", "test.gz", b"test"),
(None, b"test.gz", b"test.gz", b"test"),
(None, 3, "", b""),
("other.gz", "test.gz", "other.gz", b"other"),
])
def test_igzipfile_write_to_fileobj(filename, fileobj_name, name,
header_name):
fileobj = io.BytesIO()
fileobj.name = fileobj_name
with igzip.IGzipFile(filename, "wb", fileobj=fileobj,
mtime=0) as gzip_file:
assert gzip_file.name == name
gzip_file.write(DATA)
assert not fileobj.closed
compressed = fileobj.getvalue()
if header_name:
assert compressed[3] == FNAME
assert compressed[10:].startswith(header_name + b"\x00")
else:
assert compressed[3] == 0
assert gzip.decompress(compressed) == DATA


def test_igzipfile_append(tmp_path):
path = tmp_path / "test.gz"
for _ in range(2):
with igzip.IGzipFile(path, "ab") as gzip_file:
gzip_file.write(DATA)
assert gzip.decompress(path.read_bytes()) == DATA * 2


def test_igzipfile_write_mode_from_fileobj(tmp_path):
with open(tmp_path / "test.gz", "wb") as fileobj:
with pytest.warns(FutureWarning):
gzip_file = igzip.IGzipFile(fileobj=fileobj)
with gzip_file:
assert gzip_file.mode == igzip.WRITE
assert isinstance(gzip_file.compress, isal_zlib.Compress)
gzip_file.write(DATA)
assert gzip.decompress((tmp_path / "test.gz").read_bytes()) == DATA


@pytest.mark.parametrize(["filename", "mode", "error"], [
(None, "wb", TypeError),
("missing/test.gz", "wb", FileNotFoundError),
("missing/test.gz", "ab", FileNotFoundError),
("exists.gz", "xb", FileExistsError),
])
def test_igzipfile_write_open_error(monkeypatch, tmp_path, filename, mode,
error):
(tmp_path / "exists.gz").write_bytes(b"data")
if filename is not None:
filename = tmp_path / filename
# Keep earlier tests' unraisable errors out of the hook.
gc.collect()
unraisable = []
monkeypatch.setattr(sys, "unraisablehook", unraisable.append)
with pytest.raises(error):
igzip.IGzipFile(filename, mode)
gc.collect()
assert unraisable == []
assert (tmp_path / "exists.gz").read_bytes() == b"data"


def test_igzipfile_mode_not_str(monkeypatch):
gc.collect()
unraisable = []
monkeypatch.setattr(sys, "unraisablehook", unraisable.append)
with pytest.raises(TypeError):
igzip.IGzipFile(fileobj=io.BytesIO(), mode=b"wb")
gc.collect()
assert unraisable == []


@pytest.mark.parametrize("mode", ["wb", "ab", "xb"])
def test_igzipfile_header_error_closes_opened_file(monkeypatch, tmp_path,
mode):
fileobjs = []

def failing_write_gzip_header(self, compresslevel):
fileobjs.append(self.fileobj)
raise OSError("No space left on device")

monkeypatch.setattr(igzip.IGzipFile, "_write_gzip_header",
failing_write_gzip_header)
with pytest.raises(OSError, match="No space left on device"):
igzip.IGzipFile(tmp_path / "test.gz", mode)
fileobj = io.BytesIO()
with pytest.raises(OSError, match="No space left on device"):
igzip.IGzipFile(fileobj=fileobj, mode=mode)
assert fileobjs[0].closed
assert fileobjs[1] is fileobj
assert not fileobj.closed


def test_write_readonly_file():
with igzip.IGzipFile(TEST_FILE, "rb") as test:
with pytest.raises(OSError) as error:
Expand Down
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