Computational biophysicist developing enhanced sampling methods to study protein dynamics and ligand binding, and machine learning approaches for peptide design
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vargiulab/gEDES-HM
vargiulab/gEDES-HM PublicProtocol to transfer conformational ensembles from one protein to homologues
Python
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haddocking/haddocking.github.io
haddocking/haddocking.github.io PublicWebpage of the Bonvinlab @ Utrecht University and HADDOCK software
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vargiulab/gEDES
vargiulab/gEDES Publicscripts to perform gEDES MD simulations, cluster analysis of the protein conformations, and docking with Autodock
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vargiulab/binding-site-pca
vargiulab/binding-site-pca PublicPCA of binding-site conformations across an ensemble of aligned protein structures
Python
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