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@ding-lab

Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

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  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 133 55

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 102 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 61 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 54 26

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 44 14

  6. PanCan_snATAC_publication PanCan_snATAC_publication Public

    Jupyter Notebook 22 5

Repositories

Showing 10 of 153 repositories
  • SenNet_liver Public
    ding-lab/SenNet_liver's past year of commit activity
    HTML 0 0 0 0 Updated Nov 2, 2026
  • FSAudit Public

    Filesystem audit visualization

    ding-lab/FSAudit's past year of commit activity
    Shell 1 0 0 0 Updated Oct 28, 2026
  • pancancerXenium_script Public

    Code and analysis scripts for the publication: Tumor interactions with immune and neural architectures shape invasive programs across 10 cancer types

    ding-lab/pancancerXenium_script's past year of commit activity
    Python 0 0 0 0 Updated Oct 26, 2026
  • UCHL1_publication Public

    Code and analysis scripts for the publication: [Functional and spatial multimodal dissection reveals a UCHL1-driven malignant program in clear cell renal cell carcinoma]

    ding-lab/UCHL1_publication's past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Oct 24, 2026
  • HEID Public

    Cell types and tissue structures from H&E across cancers: molecular definition of tumor boundaries, TLS and nerve regions, paired-image alignment, and the H&E models trained on them

    ding-lab/HEID's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 28, 2026
  • 10Xmapping Public

    mapping somatic variants to cell barcodes in scRNA-Seq data

    ding-lab/10Xmapping's past year of commit activity
    Perl 11 MIT 2 1 0 Updated Sep 21, 2026
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper's past year of commit activity
    Perl 21 AGPL-3.0 9 1 0 Updated Sep 21, 2026
  • rcwrapper Public

    calculate vaf for variants based on bam

    ding-lab/rcwrapper's past year of commit activity
    Perl 0 0 0 0 Updated Aug 27, 2026
  • mCRC_publication Public
    ding-lab/mCRC_publication's past year of commit activity
    R 1 0 0 0 Updated Aug 22, 2026
  • G4X_viewer Public
    ding-lab/G4X_viewer's past year of commit activity
    Dockerfile 0 0 0 0 Updated Aug 17, 2026
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