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@TravisWheelerLab

Wheeler Lab

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  1. nail nail Public

    Nail is an Alignment Inference tooL

    Rust 71 6

  2. BATH BATH Public

    Better Alignments with Translated HMMER

    C 28 6

  3. ULTRA ULTRA Public

    ULTRA Locates Tandemly Repetitive Areas

    C++ 41 5

  4. sufr sufr Public

    Parallel Construction of Suffix Arrays in Rust

    Rust 26 2

  5. DIPLOMAT DIPLOMAT Public

    Deep learning-based Identity Preserving Labeled-Object Multi-Animal Tracking (Beta)

    Python 10 3

  6. NEAR NEAR Public

    Jupyter Notebook 2

Repositories

Showing 10 of 84 repositories
  • sufr Public

    Parallel Construction of Suffix Arrays in Rust

    TravisWheelerLab/sufr's past year of commit activity
    Rust 26 BSD-3-Clause 2 3 0 Updated Nov 13, 2026
  • ultra-rs Public
    TravisWheelerLab/ultra-rs's past year of commit activity
    Rust 0 BSD-3-Clause 0 0 0 Updated Nov 13, 2026
  • mdrepo-rs Public

    MDRepo tools in Rust

    TravisWheelerLab/mdrepo-rs's past year of commit activity
    Rust 0 BSD-3-Clause 1 20 2 Updated Nov 13, 2026
  • ULTRA Public

    ULTRA Locates Tandemly Repetitive Areas

    TravisWheelerLab/ULTRA's past year of commit activity
    C++ 41 BSD-3-Clause 5 3 1 Updated Nov 12, 2026
  • aurora Public
    TravisWheelerLab/aurora's past year of commit activity
    Rust 2 BSD-3-Clause 0 0 0 Updated Nov 12, 2026
  • nail Public

    Nail is an Alignment Inference tooL

    TravisWheelerLab/nail's past year of commit activity
    Rust 71 BSD-3-Clause 6 3 0 Updated Nov 11, 2026
  • ninja Public

    NINJA: large-scale neighbor-joining phylogeny inference (Rust)

    TravisWheelerLab/ninja's past year of commit activity
    Rust 0 BSD-3-Clause 0 0 0 Updated Nov 9, 2026
  • conferences Public

    Upcoming conferences & workshops of interest to the Wheeler Lab (bioinformatics, ML for biology, genomics, protein structure).

    TravisWheelerLab/conferences's past year of commit activity
    JavaScript 0 1 0 0 Updated Nov 9, 2026
  • Simpatico Public

    Simpatico produces high-dimensional embeddings of atoms in proteins and small molecules. Atomic representations produced by Simpatico are co-located in embedding space according to their interaction potential, allowing users to perform rapid virtual screening over extremely large datasets.

    TravisWheelerLab/Simpatico's past year of commit activity
    Python 3 BSD-3-Clause 1 0 0 Updated Nov 6, 2026
  • BATH Public

    Better Alignments with Translated HMMER

    TravisWheelerLab/BATH's past year of commit activity
    C 28 6 0 4 Updated Nov 6, 2026
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