All pull requests

Pull requests

• Re-reference blocks of samples at a time in common_reference to reduce peak memory

  #4908·h-mayorquin opened Nov 4, 2026Contributor·

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• Compute zarr shards one chunk at a time to reduce peak memory

  #4907·h-mayorquin opened Nov 4, 2026Contributor·

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• Allow for the creation of template libraries from a recording

  chronic
  #4906·chrishalcrow opened Nov 4, 2026Member·

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  1

• Shift subsets of channels at a time in phase_shift to reduce peak memory

  performancepreprocessing
  #4904·h-mayorquin opened Nov 3, 2026Contributor·

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• Try bumping Python to 3.15

  packaging
  #4895·chrishalcrow opened Oct 26, 2026Member·

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  2

• Update score labels to avoid bad assert

  bugcomparison
  #4888·cwindolf opened Oct 21, 2026Collaborator·

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  11

• perf: reuse TDC peeler distance work and bound temporal neighbor searches

  performancesortingcomponents
  #4874·JESUSROYETH opened Oct 15, 2026Contributor·

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• perf: batch finite differences in monopolar log-penalty fits

  performancepostprocessing
  #4871·JESUSROYETH opened Oct 15, 2026Contributor·

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• Fit amplitude scalings with a numba kernel on the normal equations

  performancepostprocessing
  #4870·galenlynch opened Oct 14, 2026Contributor·

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  3

• Fit PCA in batches to overcome LAPACK memory overflow

  postprocessing
  #4869·kushaangupta opened Oct 14, 2026Contributor·

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  1

  1

• Add method="fir" to highpass_filter and bandpass_filter

  performancepreprocessing
  #4856·galenlynch opened Oct 12, 2026Contributor·

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• Add fir_filter step and FIR highpass and bandpass designs

  performancepreprocessing
  #4855·galenlynch opened Oct 12, 2026Contributor·

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  1

• Faster exact median for common_reference

  performancepreprocessing
  #4854·galenlynch opened Oct 12, 2026Contributor·

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  5

• Scale local reference and sparsity computation to 3D per probe geometry

  preprocessing
  #4852·kushaangupta opened Oct 12, 2026Contributor·

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  1

• Speed up soft merges with vectorized spike remapping

  curationperformance
  #4848·JESUSROYETH opened Oct 9, 2026Contributor·

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• Speed up common median reference on channel-sized axes

  preprocessing
  #4836·JESUSROYETH opened Oct 6, 2026Contributor·

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  3

• Add num_chunk_per_batch to job kwargs and use it for zarr v3 shard writes

  concurrency
  #4833·samuelgarcia opened Oct 6, 2026Member·

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  · 0.106.0
  12

• IBL raw data quality metrics

  #4823·JoeZiminski opened Oct 2, 2026Contributor·

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  3

• Rename the spike vector caches to state which order they hold

  corerefactor
  #4817·h-mayorquin opened Oct 2, 2026Contributor·

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  · 0.106.0
  8

  

• Parallelize symmetric sorting comparisons

  comparisonperformance
  #4810·JESUSROYETH opened Sep 30, 2026Contributor·

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  · 0.106.0
  1

• Reorder spike vectors with a flexible-dtype numba kernel

  coreperformance
  #4784·grahamfindlay opened Sep 15, 2026Collaborator·

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  5

• Add BonsaiOnixArrowRecording class

  extractors
  #4778·chrishalcrow opened Sep 14, 2026Member·

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• Modify define_function_from_class to inject function to module

  core
  #4753·alejoe91 opened Sep 3, 2026Member·

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  1

• Modify define_function_handling_dict_from_class to inject function to module directly

  corerefactor
  #4752·alejoe91 opened Sep 3, 2026Member·

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  2

• Release the shared memory accumulator when template estimation fails

  bugcore
  #4732·adityasingh2400 opened Aug 5, 2026Contributor·

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  · 0.106.0
  2