Plant Biotechnology and Bioinformatics (PuckerLab)

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1. XpBrew XpBrew Public

   Repository for XpBrew - an end-to-end pipeline for RNA-seq data processing

   Python 4

2. eGPS eGPS Public

   tool for transcription start site (TSS) detection in plants based on RNA-seq data

   Python 3

3. FunctionalAnnotation FunctionalAnnotation Public

   collection of functional annotation methods in plant genomics

   Python 3

4. CoveragePlotter CoveragePlotter Public

   generate coverage figure for genomic region based on BAM

   Python 1

5. PlantXpresso PlantXpresso Public

   Scripts for backend development of PlantXpresso webserver hosting the plant species datasets from the PanXpresso data collection.

   Python 1

6. PlantGenomicsGuide PlantGenomicsGuide Public

   Forked from bpucker/PlantGenomicsGuide

   Instructions for all major step in a plant genome sequencing project

   Python