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  1. Bio-AI_Study_Archive Bio-AI_Study_Archive Public

    Archive of Deep Learning & Bio-AI projects. Bridging Wet-Lab Biology with Computational Intelligence using TensorFlow & Keras.

    Jupyter Notebook 1

  2. In_Silico_Protein_Engineering_YarroWCO_iGEM_KUL_2023 In_Silico_Protein_Engineering_YarroWCO_iGEM_KUL_2023 Public

    iGEM 2023 KU Leuven (Silver Medal): Yarrowia lipolytica engineered to turn waste cooking oil into campesterol. Dry lab — AlphaFold structure prediction, AutoDock Vina docking, and Amber MD (RMSD/RM…

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  3. LAIDD_drug_discovery LAIDD_drug_discovery Public

    LAIDD AI-driven Drug Discovery practical portfolio — structure-based & ligand-based approaches using deep learning

    Jupyter Notebook 1

  4. vhh-mpnn-selfconsistency vhh-mpnn-selfconsistency Public

    Pre-registered self-consistency benchmark of ProteinMPNN VHH redesigns (PDB 8YVJ): ESMFold/AF2-multimer refolding + Rosetta interface cross-check, with shuffle/random/native controls

    Jupyter Notebook 1

  5. pdl1-rfdiffusion-hotspots pdl1-rfdiffusion-hotspots Public

    Does RFdiffusion hotspot specification change binder design outcomes? 50 epitope vs 50 non-epitope control designs, judged against pre-registered criteria. The generator's own backbones show no dif…

    Jupyter Notebook 1

  6. simoa_QC_portfolio simoa_QC_portfolio Public

    Phased ML approach for clinical assay QC

    1